User Tools

Site Tools


en:customized_functions:beta.div

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision
Previous revision
en:customized_functions:beta.div [2018/03/31 11:13]
David Zelený
en:customized_functions:beta.div [2018/03/31 11:15]
David Zelený
Line 2: Line 2:
 **Author: Pierre Legendre** **Author: Pierre Legendre**
  
-Source: Legendre & De Caceres (2013): Beta diversity as the variance of community data: dissimilarity coefficients and partitioning. //Ecology Letters//, 16: 951–963, [[http://​onlinelibrary.wiley.com/​doi/​10.1111/​ele.12141/​suppinfo|Appendix S4.r]]. ​Available ​also from [[http://​adn.biol.umontreal.ca/​~numericalecology/​Rcode/​|P. Legendre'​s website]].+Source: Legendre & De Caceres (2013): Beta diversity as the variance of community data: dissimilarity coefficients and partitioning. //Ecology Letters//, 16: 951–963, [[http://​onlinelibrary.wiley.com/​doi/​10.1111/​ele.12141/​suppinfo|Appendix S4.r]]. ​Previously available ​also from [[http://​adn.biol.umontreal.ca/​~numericalecology/​Rcode/​|P. Legendre'​s website]], now implemented as a part of ''​adespatial''​ package (S. Dray, see [[https://​www.rdocumentation.org/​packages/​adespatial/​versions/​0.1-1/​topics/​beta.div|help file]]).
  
-Help file with detail description ​of the function's arguments ​and working example using mite dataset ​is in [[http://onlinelibrary.wiley.com/store/10.1111/ele.12141/asset/supinfo/ele12141-sup-0004-AppendixS4.pdf?​v=1&​s=03a7162c4c718753e715b0649b4e1e330148b584|Appendix S4.pdf]]+ 
 +The code presented here comes from P. Legendre'​s website and is slightly different (updated) compared to the original code published as Appendix S4 of the paper (among other changes, the name of ''​percentagedifference''​ method has been changed into ''​%difference'', ​and one more dissimilarity metric has been added, namely ''​ruzicka''​). Help file for the function ​is [[https://github.com/zdealveindy/anadat-r/raw/master/scripts/beta.div.help.pdf|here]].
  
 Direct import of Legendre'​s code: Direct import of Legendre'​s code:
 <code rsplus> <code rsplus>
 source ('​https://​raw.githubusercontent.com/​zdealveindy/​anadat-r/​master/​scripts/​beta.div.R'​) source ('​https://​raw.githubusercontent.com/​zdealveindy/​anadat-r/​master/​scripts/​beta.div.R'​)
 + 
 </​code>​ </​code>​
  
-Note that this function is now implemented as a part of ''​adespatial''​ package (S. Dray, see [[https://​www.rdocumentation.org/​packages/​adespatial/​versions/​0.1-1/​topics/​beta.div|help file]]). The code on this website comes from P. Legendre'​s website and is slightly different (updated) compared to the original code published as Appendix S4 of the paper (among other changes, the name of ''​percentagedifference''​ method has been changed into ''​%difference'',​ and one more dissimilarity metric has been added, namely ''​ruzicka''​).+
    
  
en/customized_functions/beta.div.txt · Last modified: 2018/03/31 11:15 by David Zelený