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en:data:simul-spatial [2017/03/02 16:42]
David Zelený
en:data:simul-spatial [2018/04/09 15:23] (current)
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 ===== Data for download ===== ===== Data for download =====
  
-R library {{http://www.davidzeleny.net/​anadat-r/​data-download/​neutral.vp.3.1.0/​neutral.vp_1.0-0.zip}} (author: Tyler Smith, published as an appendix to Smith & Lundholm 2010, current version compiled in R 3.1.0; x86_64-w64-mingw32)((This binary file was created from updated source file, which contains also NAMESPACE file, not present in the original source archive written by Tyler Smith. Updated source file can be downloaded {{http://www.davidzeleny.net/​anadat-r/​data-download/​neutral.vp.3.1.0/​neutral.vp_1.0-0.tar.gz|here}}. Previous version of package binary, compiled in R 2.15.0, can be found {{http://www.davidzeleny.net/​anadat-r/​data-download/​neutral.vp.2.15.0/​neutral.vp_1.0-0.zip|here}})). The ''​neutral.vp''​ library requires installation of additional libraries: ''​vegan'',​ ''​permute'' ​ and ''​packfor''​ ((''​packfor''​ should be installed from [[http://​r-forge.r-project.org/​R/?​group_id=195|R-forge]] using the function ''​install.packages("​packfor",​ repos="​http://​R-Forge.R-project.org"​)''​. However, it works only for the latest version of R; if you need to install the library to an older R version, you need to compile it by yourself from the source (the *.tar.gz file).)).+R library {{https://raw.githubusercontent.com/​zdealveindy/anadat-r/master/​data/​neutral.vp.3.1.0/​neutral.vp_1.0-0.zip}} (author: Tyler Smith, published as an appendix to Smith & Lundholm 2010, current version compiled in R 3.1.0; x86_64-w64-mingw32)((This binary file was created from updated source file, which contains also NAMESPACE file, not present in the original source archive written by Tyler Smith. Updated source file can be downloaded {{https://raw.githubusercontent.com/​zdealveindy/anadat-r/master/​data/​neutral.vp.3.1.0/​neutral.vp_1.0-0.tar.gz|here}}. Previous version of package binary, compiled in R 2.15.0, can be found {{https://raw.githubusercontent.com/​zdealveindy/anadat-r/master/​data/​neutral.vp.2.15.0/​neutral.vp_1.0-0.zip|here}})). The ''​neutral.vp''​ library requires installation of additional libraries: ''​vegan'',​ ''​permute'' ​ and ''​packfor''​ ((''​packfor''​ should be installed from [[http://​r-forge.r-project.org/​R/?​group_id=195|R-forge]] using the function ''​install.packages("​packfor",​ repos="​http://​R-Forge.R-project.org"​)''​. However, it works only for the latest version of R; if you need to install the library to an older R version, you need to compile it by yourself from the source (the *.tar.gz file).)).
  
  
 ===== Script for direct import of data to R ===== ===== Script for direct import of data to R =====
 <code rsplus> <code rsplus>
-low.disp.spe <- read.delim ('http://www.davidzeleny.net/anadat-r/lib/exe/fetch.php?​media=data:​low-disp-spe.txt'​) +low.disp.spe <- read.delim ('https://raw.githubusercontent.com/​zdealveindy/anadat-r/master/data/​low-disp-spe.txt'​) 
-high.disp.spe <- read.delim ('http://www.davidzeleny.net/anadat-r/lib/exe/fetch.php?​media=data:​high-disp-spe.txt'​) +high.disp.spe <- read.delim ('https://raw.githubusercontent.com/​zdealveindy/anadat-r/master/data/​high-disp-spe.txt'​) 
-env <- read.delim ('http://www.davidzeleny.net/anadat-r/lib/exe/fetch.php?​media=data:​env-spatial-model.txt'​) +env <- read.delim ('https://raw.githubusercontent.com/​zdealveindy/anadat-r/master/data/​env-spatial-model.txt'​) 
-coord <- read.delim ('http://www.davidzeleny.net/anadat-r/lib/exe/fetch.php?​media=data:​coord-spatial-model.txt'​)+coord <- read.delim ('https://raw.githubusercontent.com/​zdealveindy/anadat-r/master/data/​coord-spatial-model.txt'​)
    
 </​code>​ </​code>​
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 What happens: although at the beginning everything is randomly distributed,​ after some time the community gets spatial structure (patches of different color and different size, which are moving in space in the course of time). Video at the left represents community composed of species with high dispersal ability, which means they can disperse not only to the neighbouring cells, but also further; the video at the right shows a community with species of low dispersal abilities. What happens: although at the beginning everything is randomly distributed,​ after some time the community gets spatial structure (patches of different color and different size, which are moving in space in the course of time). Video at the left represents community composed of species with high dispersal ability, which means they can disperse not only to the neighbouring cells, but also further; the video at the right shows a community with species of low dispersal abilities.
  
-{{youtube>​MBRvcpx3NXo?​small}} {{youtube>​N_Q0T8iAwtA?​small}}+{{youtube>​MBRvcpx3NXo?​large}} {{youtube>​N_Q0T8iAwtA?​large}}
en/data/simul-spatial.txt · Last modified: 2018/04/09 15:23 (external edit)