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Analysis of community ecology data in R
David Zelený
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hier-agglom_examples
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Introduction
Introduction
About R program
Links to other materials
Courses & workshops
Theory, R functions & Examples
Overview of analyses
Data types and import into R
Preparation of data for analysis
Ecological resemblance
Ordination analysis
PCA & tb-PCA
CA & DCA
PCoA & NMDS
RDA, tb-RDA, CCA & db-RDA
Ordination diagrams
Supplementary variables
Explained variation and test
Variable selection
Variation partitioning
Numerical classification
Cluster analysis
TWINSPAN
K-means
Evaluation of classification
Species attributes
CWM & fourth corner
CWM-RDA & RLQ
Diversity analysis
Diversity indices
Comparing diversity
References
Data & Functions
Example data
Functions from NumEcol with R
Custom-built functions
Others
Common confusions & mistakes
Animation of ordination
Artefacts in ordinations
Logo (of heart)
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Author:
David Zelený
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· Last modified: 2018/04/09 15:23 by
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