Analysis of community ecology data in R

• Introduction
• About R program
• Links to other materials
• Courses & workshops

• Overview of analyses
• Data types and import into R
• Preparation of data for analysis
• Ecological resemblance
• Ordination analysis
  • PCA & tb-PCA
  • CA & DCA
  • PCoA & NMDS
  • RDA, tb-RDA, CCA & db-RDA
  • Ordination diagrams
  • Supplementary variables
  • Explained variation and test
  • Variable selection
  • Variation partitioning
• Numerical classification
  • Cluster analysis
  • TWINSPAN
  • K-means
  • Evaluation of classification
• Species attributes
  • CWM & fourth corner
  • CWM-RDA & RLQ
• Diversity analysis
  • Diversity indices
  • Comparing diversity

• References

• Example data
• Functions from NumEcol with R
• Custom-built functions

• Common confusions & mistakes
• Animation of ordination
• Artefacts in ordinations
• Logo (of heart)

Permalink: davidzeleny.net/anadat-r
Author: David Zelený