Introduction

• Introduction
• About R program
• Links to other materials
• Courses & workshops

Theory, Examples & Exercises

• Overview of analyses
• Data types and import into R
• Preparation of data for analysis
• Ecological resemblance

• Ordination analysis
• Unconstrained ordination
  • PCA & tb-PCA
  • CA & DCA
  • PCoA
  • NMDS
  • Ordination diagrams
  • Supplementary variables
• Constrained ordination
  • RDA & tb-RDA
  • CCA
  • db-RDA
  • Explained variance
  • Monte Carlo permutation test
  • Forward selection
  • Variation partitioning

• Numerical classification
  • Hierarchical agglomerative
  • Hierarchical divisive
  • Non-hierarchical
  • Evaluation of classification

• Species attributes
  • CWM
  • Fourth corner & RLQ

• Diversity analysis
  • Diversity indices
  • Comparing diversity
  • Beta diversity

• References

Data & Functions

• Example data
• Functions from NumEcol with R
• Custom-built functions

Others

• Common confusions & mistakes
• Animation of ordination
• Artefacts in ordinations
• Logo (of heart)

Permalink: davidzeleny.net/anadat-r
Author: David Zelený