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Analysis of community ecology data in R
David Zelený
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references
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Introduction
Introduction
About R program
Links to other materials
Courses & workshops
Theory, R functions & Examples
Overview of analyses
Data types and import into R
Preparation of data for analysis
Sampling design
Ecological resemblance
Ordination analysis
PCA & tb-PCA
CA & DCA
PCoA & NMDS
RDA, tb-RDA, CCA & db-RDA
Ordination diagrams
Supplementary variables
Explained variation
Permutation test
Variable selection
Variation partitioning
Numerical classification
Cluster analysis
TWINSPAN
K-means
Evaluation of classification
Diversity analysis
Diversity indices
Comparing diversity
Species attributes
CWM & fourth corner
CWM-RDA & RLQ
References
Data & Functions
Example data
Functions from NumEcol with R
Custom-built functions
Others
Common confusions & mistakes
Animation of ordination
Artefacts in ordinations
Logo (of heart)
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David Zelený
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· Last modified: 2019/02/06 09:40 by
David Zelený
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