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recol:install_r

How to install R and Rstudio

For semester 108-1: make sure that you have the latest version of R and RStudion installed on your computers:

  • R - version 3.6.1 or newer
  • RStudio - version 1.2.1335 or newer

How to install R

  1. Download the installation file of the newest R version from CRAN1). Choose your operation system (e.g. Donwload R for Windows), and then choose either Install R for the first time if you haven't install R before you your computer, or base if you already did and you are installing a new version; download the installation file and proceed further). If you are using Mac, you may need to Google some help (eg see this website for help).
  2. Install the program - you may keep the default location of installation files in Program Files/R. On Windows, the R folder in your Program Files folder may contain several subfolders with different R versions installed in parallel, e.g. R-2.10.1, R-2.11.1 etc.
  3. When you run the program, you may change some basic setting (e.g. the size of the font, colour of the background (if you feel it is more comfortable to have it e.g. orange) in menu Edit > GUI preferences. If you change anything in this window, you need to click on Save button and save the file Rconsole to the folder /Program Files/R/R-version/etc.

How to update R

If you have R already installed on your computer and you want to update to newer version, the easiest way is simply to install the new version along the old one (and later possibly delete the old one if you don't need it or you want to save space on hard drive). All R versions are, if not changed, installed beside each other in R subfolder of Program Files folder (in the case of Windows). You may need to install also all the packages you used in the previous version. You can simply copy the folder library from the old R version to new R version and run an update procedure in new R version using the command update.packages. For this, do the following:

  1. Close all running R programs (or R studio) before starting!
  2. Open some file manager (like Total Commander or Windows Explorer) and locate the library folder with R libraries from the previous version. This is usually located in c:\Program Files\R\R-x.x.x\library, where R-x.x.x is the number of the previous R version, e.g. R-3.1.2. In some cases it could, however, be somewhere else; if not sure, open R, and type .libPaths () to see location of library path on your computer.
  3. Copy all subfolders in library folder into library folder of the new version. Do not overwrite the newer versions of files in the library folder of the new R version.
  4. Open the new R version, and update all packages using command update.packages(ask = F)2). This should update all the packages to their latest version compatible with current version of R.

How to install RStudio

Download the latest version from RStudio website; you will need Desktop version, Open Source Edition for your system; you may click here to get directly to the selection of actual RStudion version. Follow instructions for installation. If you already have RStudio installed in your computer, you may check whether you have the latest version and update if you don't (in RStudio menu, go to Help > Check for Updates).

RStudio is a convenient software, which combines R program with text editor and graphical interface (and offers much more, like organization of scripts and outputs into a projects within single folder, and for advanced users also convenient building of packages, document markup etc.). One thing I found a bit not handy is RStudio's native graphical output - it offers its' own unique sizeable graphical output into one of the subpanels, but this sometimes produces troubles (especially in case when you draw more complex figures). The workaround is to open the original R drawing engine - just type windows (), and new active window will open.

Optionally, there is a number of other text editors, which can be associated with R, e.g. Tinn-R. You are free to use the editor of your choice. In the class, I will use RStudio.

1)
This is a link to cloud storage, which will automatically redirect you to the local repository according to your geographical position. If doesn't work, use the manual selection in https://cran.r-project.org/mirrors.html.
2)
The argument ask = F in the function update.packages makes sure that the update function will not ask you to prompt updating each package separately.
recol/install_r.txt · Last modified: 2019/07/21 17:22 by david